1 HisKA#1
457-524 aa · 68 aa · 9.9% of protein
Raw token
HisKA:457:0.0000000000000259:524:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0D61_RS16680
Histidine kinase, Classic
Clostridioides difficile · GCF_034318205
ClassHKTypeClassicLength690 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034318205#U0D61_RS16680Stable P2CS identifier used across views.
GenomeGCF_034318205Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length690 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 690 aa (23.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa690 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
570-663 aa · 94 aa · 13.6% of protein
Raw token
HATPase_c:570:0.000000000000733:663:98:109- Raw architecture: HisKA:457:0.0000000000000259:524:68:64#HATPase_c:570:0.000000000000733:663:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034318205::NZ_JAXKVA010000094.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4723-7683Genomic interval covered by the local TCS group.
Identifiers
Old locus tagU0D61_16690RefSeq proteinWP_322141633.1
Context group ID
GCF_034318205::NZ_JAXKVA010000094.1::G00052Context members
U0D61_RS16680U0D61_RS16685
Partner locus tags
U0D61_RS16680U0D61_RS16685
Partner old locus tags
U0D61_16690U0D61_16695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_322141633.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0D61_RS16680Primary locus identifier stored in the genes table.
Old locus tagU0D61_16690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXKVA010000094.1Sequence record reported by the local genomic context database.
Genomic interval4 723-6 795 nt2 073 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 723-7 683 ntGCF_034318205::NZ_JAXKVA010000094.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034318205::NZ_JAXKVA010000094.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXKVA010000094.1All displayed genes belong to this local TCS context.
Neighborhood span4 723-7 683 nt2 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 723 nt7 683 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0D61_RS16680GCF_034318205#U0D61_RS16680
HKClassicCurrent focus
4 723-6 795 nt · Reverse (-)
U0D61_RS16685GCF_034318205#U0D61_RS16685
RROmpR
6 991-7 683 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034318205#U0D61_RS16680The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0793186
Simplified PFAM architecture for HKOC_0793186
PFAM domain coverage: 160 / 690 aa (23.2%)
1 aa690 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[457-524] | HATPase_c[571-662]
- Domain count: 2
- Matched identifier: HKOC_0793186
- Positioned domains: HisKA 457-524 ; HATPase_c 571-662
Cluster members and taxonomy
Representative gene: GCF_034318205#U0D61_RS16680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034318205
AssemblyASM3431820v1 · Scaffoldhaploid
Genome composition3 995 092 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key