1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:5.04e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIFTS33_RS16570
Response regulator OmpR family
Clostridioides difficile · GCF_034271255
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_034271255#CDIFTS33_RS16570Stable P2CS identifier used across views.
GenomeGCF_034271255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.96e-22:223:75:77- Raw architecture: Response_reg:5:5.04e-22:114:111:111#Trans_reg_C:150:2.96e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_034271255::NZ_CP134872.1::G00053
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3655070-3660795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIFTS33_33130RefSeq proteinWP_009891737.1
Context group ID
GCF_034271255::NZ_CP134872.1::G00053Context members
CDIFTS33_RS16560CDIFTS33_RS16565CDIFTS33_RS16570CDIFTS33_RS16575CDIFTS33_RS16580
Partner locus tags
CDIFTS33_RS16560CDIFTS33_RS16565CDIFTS33_RS16570CDIFTS33_RS16575CDIFTS33_RS16580
Partner old locus tags
CDIFTS33_33110CDIFTS33_33120CDIFTS33_33130CDIFTS33_33140CDIFTS33_33150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891737.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N6A7Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N6A7_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIFTS33_RS16570Primary locus identifier stored in the genes table.
Old locus tagCDIFTS33_33130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP134872.1Sequence record reported by the local genomic context database.
Genomic interval3 657 301-3 657 981 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 655 070-3 660 795 ntGCF_034271255::NZ_CP134872.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034271255::NZ_CP134872.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP134872.1All displayed genes belong to this local TCS context.
Neighborhood span3 655 070-3 660 795 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 655 070 nt3 660 795 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
CDIFTS33_RS16560GCF_034271255#CDIFTS33_RS16560
HKClassic
3 655 070-3 656 185 nt · Reverse (-)
CDIFTS33_RS16565GCF_034271255#CDIFTS33_RS16565
RROmpR
3 656 221-3 656 919 nt · Reverse (-)
CDIFTS33_RS16570GCF_034271255#CDIFTS33_RS16570
RROmpRCurrent focus
3 657 301-3 657 981 nt · Reverse (-)
CDIFTS33_RS16575GCF_034271255#CDIFTS33_RS16575
HKClassic
3 658 031-3 660 046 nt · Reverse (-)
CDIFTS33_RS16580GCF_034271255#CDIFTS33_RS16580
RROmpR
3 660 118-3 660 795 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216525Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407941
Simplified PFAM architecture for RROC_1407941
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1407941
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034271255
AssemblyASM3427125v1 · Complete Genomehaploid
Genome composition4 116 134 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key