1 HisKA_3#1
98-161 aa · 64 aa · 21.5% of protein
Raw token
HisKA_3:98:2.15e-19:161:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDIFTS33_RS06320
Histidine kinase, Classic
Clostridioides difficile · GCF_034271255
ClassHKTypeClassicLength297 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034271255#CDIFTS33_RS06320Stable P2CS identifier used across views.
GenomeGCF_034271255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length297 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 297 aa (50.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa297 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
204-288 aa · 85 aa · 28.6% of protein
Raw token
HATPase_c:204:0.00000000000112:288:104:109- Raw architecture: HisKA_3:98:2.15e-19:161:65:68#HATPase_c:204:0.00000000000112:288:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034271255::NZ_CP134872.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1342264-1343794Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDIFTS33_12690RefSeq proteinWP_235656100.1
Context group ID
GCF_034271255::NZ_CP134872.1::G00020Context members
CDIFTS33_RS06315CDIFTS33_RS06320
Partner locus tags
CDIFTS33_RS06315CDIFTS33_RS06320
Partner old locus tags
CDIFTS33_12680CDIFTS33_12690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_235656100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDIFTS33_RS06320Primary locus identifier stored in the genes table.
Old locus tagCDIFTS33_12690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP134872.1Sequence record reported by the local genomic context database.
Genomic interval1 342 901-1 343 794 nt894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 342 264-1 343 794 ntGCF_034271255::NZ_CP134872.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034271255::NZ_CP134872.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP134872.1All displayed genes belong to this local TCS context.
Neighborhood span1 342 264-1 343 794 nt1 531 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 342 264 nt1 343 794 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDIFTS33_RS06315GCF_034271255#CDIFTS33_RS06315
RRNarL
1 342 264-1 342 908 nt · Reverse (-)
CDIFTS33_RS06320GCF_034271255#CDIFTS33_RS06320
HKClassicCurrent focus
1 342 901-1 343 794 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946035#C3351_RS06560Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2890158
Simplified PFAM architecture for HKOC_2890158
PFAM domain coverage: 149 / 297 aa (50.2%)
1 aa297 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[98-161] | HATPase_c[204-288]
- Domain count: 2
- Matched identifier: HKOC_2890158
- Positioned domains: HisKA_3 98-161 ; HATPase_c 204-288
Cluster members and taxonomy
Representative gene: GCF_002946035#C3351_RS06560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034271255
AssemblyASM3427125v1 · Complete Genomehaploid
Genome composition4 116 134 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key