1 HisKA#1
93-156 aa · 64 aa · 20.6% of protein
Raw token
HisKA:93:0.0000000617:156:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ131_RS09245
Histidine kinase, Classic
Clostridioides difficile · GCF_034188805
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188805#SQ131_RS09245Stable P2CS identifier used across views.
GenomeGCF_034188805Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 311 aa (55.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
204-310 aa · 107 aa · 34.4% of protein
Raw token
HATPase_c:204:5.41e-31:310:107:109- Raw architecture: HisKA:93:0.0000000617:156:64:64#HATPase_c:204:5.41e-31:310:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188805::NZ_JAXHQK010000005.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80229-81853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ131_09235RefSeq proteinWP_021366293.1
Context group ID
GCF_034188805::NZ_JAXHQK010000005.1::G00024Context members
SQ131_RS09240SQ131_RS09245
Partner locus tags
SQ131_RS09240SQ131_RS09245
Partner old locus tags
SQ131_09230SQ131_09235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366293.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AYG3Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AYG3_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ131_RS09245Primary locus identifier stored in the genes table.
Old locus tagSQ131_09235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHQK010000005.1Sequence record reported by the local genomic context database.
Genomic interval80 918-81 853 nt936 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 229-81 853 ntGCF_034188805::NZ_JAXHQK010000005.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188805::NZ_JAXHQK010000005.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHQK010000005.1All displayed genes belong to this local TCS context.
Neighborhood span80 229-81 853 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 229 nt81 853 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ131_RS09240GCF_034188805#SQ131_RS09240
RROmpR
80 229-80 921 nt · Forward (+)
SQ131_RS09245GCF_034188805#SQ131_RS09245
HKClassicCurrent focus
80 918-81 853 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS03850Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876518
Simplified PFAM architecture for HKOC_2876518
PFAM domain coverage: 170 / 311 aa (54.7%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[93-155] | HATPase_c[204-310]
- Domain count: 2
- Matched identifier: HKOC_2876518
- Positioned domains: HisKA 93-155 ; HATPase_c 204-310
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS03850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188805
AssemblyASM3418880v1 · Contighaploid
Genome composition4 099 624 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key