1 Response_reg#1
4-92 aa · 89 aa · 89.0% of protein
Raw token
Response_reg:4:0.00000000000000161:92:89:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SRH55_RS19030
Response regulator, CheY family
Clostridioides difficile · GCF_034188765
ClassRRTypeCheYLength100 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034188765#SRH55_RS19030Stable P2CS identifier used across views.
GenomeGCF_034188765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length100 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage89 / 100 aa (89.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa100 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.00000000000000161:92:89:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034188765::NZ_JAXHRQ010000089.1::G00056
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4016-4316Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSRH55_19060RefSeq proteinWP_321140549.1
Context group ID
GCF_034188765::NZ_JAXHRQ010000089.1::G00056Context members
SRH55_RS19030
Partner locus tags
SRH55_RS19030
Partner old locus tags
SRH55_19060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321140549.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSRH55_RS19030Primary locus identifier stored in the genes table.
Old locus tagSRH55_19060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRQ010000089.1Sequence record reported by the local genomic context database.
Genomic interval4 016-4 316 nt301 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 016-4 316 ntGCF_034188765::NZ_JAXHRQ010000089.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188765::NZ_JAXHRQ010000089.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRQ010000089.1All displayed genes belong to this local TCS context.
Neighborhood span4 016-4 316 nt301 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 016 nt4 316 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SRH55_RS19030GCF_034188765#SRH55_RS19030
RRCheYCurrent focus
4 016-4 316 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002300865#BGT97_RS20755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653813
Simplified PFAM architecture for RROC_0653813
PFAM domain coverage: 200 / 260 aa (76.9%)
1 aa260 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[142-225]
- Domain count: 2
- Matched identifier: RROC_0653813
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 142-225 ; LytTR 142-225
Cluster members and taxonomy
Representative gene: GCF_002300865#BGT97_RS20755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188765
AssemblyASM3418876v1 · Contighaploid
Genome composition4 157 332 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key