1 HisKA#1
124-189 aa · 66 aa · 21.7% of protein
Raw token
HisKA:124:0.000000167:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ904_RS16070
Histidine kinase, Classic
Clostridioides difficile · GCF_034188745
ClassHKTypeClassicLength304 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188745#SQ904_RS16070Stable P2CS identifier used across views.
GenomeGCF_034188745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage126 / 304 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-300 aa · 60 aa · 19.7% of protein
Raw token
HATPase_c:241:0.0000000000213:300:60:109- Raw architecture: HisKA:124:0.000000167:189:66:64#HATPase_c:241:0.0000000000213:300:60:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188745::NZ_JAXHRS010000380.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1346-2936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ904_16030RefSeq proteinWP_321130022.1
Context group ID
GCF_034188745::NZ_JAXHRS010000380.1::G00053Context members
SQ904_RS16065SQ904_RS16070
Partner locus tags
SQ904_RS16065SQ904_RS16070
Partner old locus tags
SQ904_16025SQ904_16030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321130022.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ904_RS16070Primary locus identifier stored in the genes table.
Old locus tagSQ904_16030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRS010000380.1Sequence record reported by the local genomic context database.
Genomic interval2 022-2 936 nt915 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 346-2 936 ntGCF_034188745::NZ_JAXHRS010000380.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188745::NZ_JAXHRS010000380.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRS010000380.1All displayed genes belong to this local TCS context.
Neighborhood span1 346-2 936 nt1 591 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 346 nt2 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ904_RS16065GCF_034188745#SQ904_RS16065
RROmpR
1 346-2 032 nt · Forward (+)
SQ904_RS16070GCF_034188745#SQ904_RS16070
HKClassicCurrent focus
2 022-2 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034188745#SQ904_RS16070The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2883606
Simplified PFAM architecture for HKOC_2883606
PFAM domain coverage: 127 / 304 aa (41.8%)
1 aa304 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-296]
- Domain count: 2
- Matched identifier: HKOC_2883606
- Positioned domains: HisKA 124-189 ; HATPase_c 236-296
Cluster members and taxonomy
Representative gene: GCF_034188745#SQ904_RS16070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188745
AssemblyASM3418874v1 · Contighaploid
Genome composition4 223 014 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 52 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key