1 HAMP#1
43-112 aa · 70 aa · 20.4% of protein
Raw token
HAMP:43:0.0000000000000271:112:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ904_RS14635
Histidine kinase, Classic
Clostridioides difficile · GCF_034188745
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034188745#SQ904_RS14635Stable P2CS identifier used across views.
GenomeGCF_034188745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 343 aa (70.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation3 items
2 HisKA#2
119-183 aa · 65 aa · 19.0% of protein
Raw token
HisKA:119:2.56e-16:183:65:643 HATPase_c#3
231-336 aa · 106 aa · 30.9% of protein
Raw token
HATPase_c:231:1.45e-27:336:107:109- Raw architecture: HAMP:43:0.0000000000000271:112:70:69#HisKA:119:2.56e-16:183:65:64#HATPase_c:231:1.45e-27:336:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034188745::NZ_JAXHRS010000301.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span6610-7642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ904_14600RefSeq proteinWP_321129975.1
Context group ID
GCF_034188745::NZ_JAXHRS010000301.1::G00044Context members
SQ904_RS14635
Partner locus tags
SQ904_RS14635
Partner old locus tags
SQ904_14600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321129975.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ904_RS14635Primary locus identifier stored in the genes table.
Old locus tagSQ904_14600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRS010000301.1Sequence record reported by the local genomic context database.
Genomic interval6 610-7 642 nt1 033 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 610-7 642 ntGCF_034188745::NZ_JAXHRS010000301.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188745::NZ_JAXHRS010000301.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRS010000301.1All displayed genes belong to this local TCS context.
Neighborhood span6 610-7 642 nt1 033 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 610 nt7 642 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SQ904_RS14635GCF_034188745#SQ904_RS14635
HKClassicCurrent focus
6 610-7 642 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034188745#SQ904_RS14635The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2830621
Simplified PFAM architecture for HKOC_2830621
PFAM domain coverage: 220 / 343 aa (64.1%)
1 aa343 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[63-112] | HisKA[119-182] | HATPase_c[231-336]
- Domain count: 3
- Matched identifier: HKOC_2830621
- Positioned domains: HAMP 63-112 ; HisKA 119-182 ; HATPase_c 231-336
Cluster members and taxonomy
Representative gene: GCF_034188745#SQ904_RS14635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188745
AssemblyASM3418874v1 · Contighaploid
Genome composition4 223 014 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 52 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key