1 Response_reg#1
3-114 aa · 112 aa · 30.1% of protein
Raw token
Response_reg:3:8.06e-26:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ904_RS13900
Response regulator, unclassified
Clostridioides difficile · GCF_034188745
ClassRRTypeunclassifiedLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188745#SQ904_RS13900Stable P2CS identifier used across views.
GenomeGCF_034188745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 372 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation2 items
2 AAA_5#2
157-275 aa · 119 aa · 32.0% of protein
Raw token
AAA_5:157:0.00000000224:275:128:135- Raw architecture: Response_reg:3:8.06e-26:114:112:111#AAA_5:157:0.00000000224:275:128:135
- Domain description: 1 Response_reg,1 AAA_5
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188745::NZ_JAXHRS010000268.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3110Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ904_13870RefSeq proteinWP_321129958.1
Context group ID
GCF_034188745::NZ_JAXHRS010000268.1::G00041Context members
SQ904_RS13900SQ904_RS13905
Partner locus tags
SQ904_RS13900SQ904_RS13905
Partner old locus tags
SQ904_13870SQ904_13875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321129958.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ904_RS13900Primary locus identifier stored in the genes table.
Old locus tagSQ904_13870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRS010000268.1Sequence record reported by the local genomic context database.
Genomic interval1-1 116 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 110 ntGCF_034188745::NZ_JAXHRS010000268.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188745::NZ_JAXHRS010000268.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRS010000268.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 110 nt3 110 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 110 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ904_RS13900GCF_034188745#SQ904_RS13900
RRunclassifiedCurrent focus
1-1 116 nt · Reverse (-)
SQ904_RS13905GCF_034188745#SQ904_RS13905
HKClassic
1 116-3 110 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034188745#SQ904_RS13900The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_143 domains in the representative PFAM annotation.
PFAM architecture for RROC_0438357
Simplified PFAM architecture for RROC_0438357
PFAM domain coverage: 340 / 372 aa (91.4%)
1 aa372 aa
Response_regSigma54_activatAAA_lid_14
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14
- Raw architecture: Response_reg[3-113] | Sigma54_activat[137-300] | AAA_lid_14[306-370]
- Domain count: 3
- Matched identifier: RROC_0438357
- Positioned domains: Response_reg 3-113 ; Sigma54_activat 137-300 ; AAA_lid_14 306-370
Cluster members and taxonomy
Representative gene: GCF_034188745#SQ904_RS13900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188745
AssemblyASM3418874v1 · Contighaploid
Genome composition4 223 014 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 52 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key