1 HisKA#1
46-109 aa · 64 aa · 24.2% of protein
Raw token
HisKA:46:0.00000000000329:109:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SRA75_RS14135
Histidine kinase, Classic
Clostridioides difficile · GCF_034188485
ClassHKTypeClassicLength265 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188485#SRA75_RS14135Stable P2CS identifier used across views.
GenomeGCF_034188485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length265 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 265 aa (63.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
156-260 aa · 105 aa · 39.6% of protein
Raw token
HATPase_c:156:4.74e-28:260:105:109- Raw architecture: HisKA:46:0.00000000000329:109:64:64#HATPase_c:156:4.74e-28:260:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188485::NZ_JAXHRR010000014.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7903-9506Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSRA75_14095RefSeq proteinWP_231299186.1
Context group ID
GCF_034188485::NZ_JAXHRR010000014.1::G00043Context members
SRA75_RS14135SRA75_RS14140
Partner locus tags
SRA75_RS14135SRA75_RS14140
Partner old locus tags
SRA75_14095SRA75_14100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231299186.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSRA75_RS14135Primary locus identifier stored in the genes table.
Old locus tagSRA75_14095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRR010000014.1Sequence record reported by the local genomic context database.
Genomic interval7 903-8 700 nt798 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span7 903-9 506 ntGCF_034188485::NZ_JAXHRR010000014.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188485::NZ_JAXHRR010000014.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRR010000014.1All displayed genes belong to this local TCS context.
Neighborhood span7 903-9 506 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 903 nt9 506 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SRA75_RS14135GCF_034188485#SRA75_RS14135
HKClassicCurrent focus
7 903-8 700 nt · Reverse (-)
SRA75_RS14140GCF_034188485#SRA75_RS14140
RROmpR
8 814-9 506 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02380Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2910172
Simplified PFAM architecture for HKOC_2910172
PFAM domain coverage: 169 / 265 aa (63.8%)
1 aa265 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[46-109] | HATPase_c[156-260]
- Domain count: 2
- Matched identifier: HKOC_2910172
- Positioned domains: HisKA 46-109 ; HATPase_c 156-260
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188485
AssemblyASM3418848v1 · Contighaploid
Genome composition4 254 372 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 111 · HK 53 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key