1 Response_reg#1
6-118 aa · 113 aa · 52.6% of protein
Raw token
Response_reg:6:3e-28:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ483_RS07235
Response regulator NarL family
Clostridioides difficile · GCF_034188295
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034188295#SQ483_RS07235Stable P2CS identifier used across views.
GenomeGCF_034188295Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 215 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
153-207 aa · 55 aa · 25.6% of protein
Raw token
HTH_LUXR:153:4.27e-21:207:55:58- Raw architecture: Response_reg:6:3e-28:118:113:111#HTH_LUXR:153:4.27e-21:207:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034188295::NZ_JAXHQW010000005.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11429-13232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ483_07200RefSeq proteinWP_009896181.1
Context group ID
GCF_034188295::NZ_JAXHQW010000005.1::G00017Context members
SQ483_RS07235SQ483_RS07240
Partner locus tags
SQ483_RS07235SQ483_RS07240
Partner old locus tags
SQ483_07200SQ483_07205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009896181.1Primary protein accession used for annex mappings.
UniProt accessionQ18BD1Primary UniProt accession resolved in the annex database.
UniProt IDQ18BD1_CLOD6Display identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ483_RS07235Primary locus identifier stored in the genes table.
Old locus tagSQ483_07200Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHQW010000005.1Sequence record reported by the local genomic context database.
Genomic interval11 429-12 076 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 429-13 232 ntGCF_034188295::NZ_JAXHQW010000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188295::NZ_JAXHQW010000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHQW010000005.1All displayed genes belong to this local TCS context.
Neighborhood span11 429-13 232 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 429 nt13 232 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ483_RS07235GCF_034188295#SQ483_RS07235
RRNarLCurrent focus
11 429-12 076 nt · Reverse (-)
SQ483_RS07240GCF_034188295#SQ483_RS07240
HKClassic
12 069-13 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS07050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1906506
Simplified PFAM architecture for RROC_1906506
PFAM domain coverage: 168 / 215 aa (78.1%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[152-207]
- Domain count: 2
- Matched identifier: RROC_1906506
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 152-207 ; GerE 152-207
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS07050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188295
AssemblyASM3418829v1 · Contighaploid
Genome composition4 222 464 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key