1 Response_reg#1
4-117 aa · 114 aa · 48.1% of protein
Raw token
Response_reg:4:1.5e-18:117:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ932_RS07200
Response regulator LytTR family
Clostridioides difficile · GCF_034188105
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034188105#SQ932_RS07200Stable P2CS identifier used across views.
GenomeGCF_034188105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage206 / 237 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.8% of protein
Raw token
LytTR:138:1.09e-24:229:97:98- Raw architecture: Response_reg:4:1.5e-18:117:116:111#LytTR:138:1.09e-24:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034188105::NZ_JAXHRN010000006.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span182308-183021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ932_07240RefSeq proteinWP_021422119.1
Context group ID
GCF_034188105::NZ_JAXHRN010000006.1::G00018Context members
SQ932_RS07200
Partner locus tags
SQ932_RS07200
Partner old locus tags
SQ932_07240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021422119.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ932_RS07200Primary locus identifier stored in the genes table.
Old locus tagSQ932_07240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRN010000006.1Sequence record reported by the local genomic context database.
Genomic interval182 308-183 021 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span182 308-183 021 ntGCF_034188105::NZ_JAXHRN010000006.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034188105::NZ_JAXHRN010000006.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRN010000006.1All displayed genes belong to this local TCS context.
Neighborhood span182 308-183 021 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
182 308 nt183 021 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SQ932_RS07200GCF_034188105#SQ932_RS07200
RRLytTRCurrent focus
182 308-183 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451765#QSM_RS14865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962925
Simplified PFAM architecture for RROC_0962925
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0962925
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_000451765#QSM_RS14865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034188105
AssemblyASM3418810v1 · Contighaploid
Genome composition4 224 189 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 53 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key