1 HisKA#1
207-272 aa · 66 aa · 15.3% of protein
Raw token
HisKA:207:0.000000000000121:272:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SRD87_RS04960
Histidine kinase, Classic
Clostridioides difficile · GCF_034187985
ClassHKTypeClassicLength430 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034187985#SRD87_RS04960Stable P2CS identifier used across views.
GenomeGCF_034187985Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length430 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 430 aa (41.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa430 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
320-430 aa · 111 aa · 25.8% of protein
Raw token
HATPase_c:320:6.74e-29:430:111:109- Raw architecture: HisKA:207:0.000000000000121:272:66:64#HATPase_c:320:6.74e-29:430:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034187985::NZ_JAXHRT010000008.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11449-13421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSRD87_04960RefSeq proteinWP_074137422.1
Context group ID
GCF_034187985::NZ_JAXHRT010000008.1::G00056Context members
SRD87_RS04960SRD87_RS04965
Partner locus tags
SRD87_RS04960SRD87_RS04965
Partner old locus tags
SRD87_04960SRD87_04965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074137422.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSRD87_RS04960Primary locus identifier stored in the genes table.
Old locus tagSRD87_04960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRT010000008.1Sequence record reported by the local genomic context database.
Genomic interval11 449-12 741 nt1 293 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 449-13 421 ntGCF_034187985::NZ_JAXHRT010000008.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034187985::NZ_JAXHRT010000008.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRT010000008.1All displayed genes belong to this local TCS context.
Neighborhood span11 449-13 421 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 449 nt13 421 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SRD87_RS04960GCF_034187985#SRD87_RS04960
HKClassicCurrent focus
11 449-12 741 nt · Reverse (-)
SRD87_RS04965GCF_034187985#SRD87_RS04965
RROmpR
12 735-13 421 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002303415#BGU61_RS03560Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2173340
Simplified PFAM architecture for HKOC_2173340
PFAM domain coverage: 174 / 430 aa (40.5%)
1 aa430 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-272] | HATPase_c[321-429]
- Domain count: 2
- Matched identifier: HKOC_2173340
- Positioned domains: HisKA 208-272 ; HATPase_c 321-429
Cluster members and taxonomy
Representative gene: GCF_002303415#BGU61_RS03560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034187985
AssemblyASM3418798v1 · Contighaploid
Genome composition4 171 517 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key