1 Response_reg#1
9-118 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:9:3.4e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SRI86_RS14365
Response regulator OmpR family
Clostridioides difficile · GCF_034187915
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034187915#SRI86_RS14365Stable P2CS identifier used across views.
GenomeGCF_034187915Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 234 aa (77.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-227 aa · 72 aa · 30.8% of protein
Raw token
Trans_reg_C:156:1.31e-25:227:72:77- Raw architecture: Response_reg:9:3.4e-31:118:111:111#Trans_reg_C:156:1.31e-25:227:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034187915::NZ_JAXHRD010000027.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2721-4839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSRI86_14360RefSeq proteinWP_321112686.1
Context group ID
GCF_034187915::NZ_JAXHRD010000027.1::G00024Context members
SRI86_RS14360SRI86_RS14365
Partner locus tags
SRI86_RS14360SRI86_RS14365
Partner old locus tags
SRI86_14355SRI86_14360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_321112686.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSRI86_RS14365Primary locus identifier stored in the genes table.
Old locus tagSRI86_14360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHRD010000027.1Sequence record reported by the local genomic context database.
Genomic interval4 135-4 839 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 721-4 839 ntGCF_034187915::NZ_JAXHRD010000027.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034187915::NZ_JAXHRD010000027.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHRD010000027.1All displayed genes belong to this local TCS context.
Neighborhood span2 721-4 839 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 721 nt4 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SRI86_RS14360GCF_034187915#SRI86_RS14360
HKClassic
2 721-4 127 nt · Reverse (-)
SRI86_RS14365GCF_034187915#SRI86_RS14365
RROmpRCurrent focus
4 135-4 839 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034187915#SRI86_RS14365The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1069009
Simplified PFAM architecture for RROC_1069009
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-227]
- Domain count: 2
- Matched identifier: RROC_1069009
- Positioned domains: Response_reg 9-117 ; Trans_reg_C 156-227
Cluster members and taxonomy
Representative gene: GCF_034187915#SRI86_RS14365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034187915
AssemblyASM3418791v1 · Contighaploid
Genome composition4 302 337 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 107 · HK 51 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key