1 Response_reg#1
5-115 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:5:2.25e-30:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SQ297_RS08490
Response regulator OmpR family
Clostridioides difficile · GCF_034187895
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034187895#SQ297_RS08490Stable P2CS identifier used across views.
GenomeGCF_034187895Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:152:3.21e-34:228:77:77- Raw architecture: Response_reg:5:2.25e-30:115:111:111#Trans_reg_C:152:3.21e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034187895::NZ_JAXHQT010000011.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25348-27482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSQ297_08525RefSeq proteinWP_074138769.1
Context group ID
GCF_034187895::NZ_JAXHQT010000011.1::G00014Context members
SQ297_RS08490SQ297_RS08495
Partner locus tags
SQ297_RS08490SQ297_RS08495
Partner old locus tags
SQ297_08525SQ297_08530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074138769.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSQ297_RS08490Primary locus identifier stored in the genes table.
Old locus tagSQ297_08525Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXHQT010000011.1Sequence record reported by the local genomic context database.
Genomic interval25 348-26 046 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 348-27 482 ntGCF_034187895::NZ_JAXHQT010000011.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034187895::NZ_JAXHQT010000011.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXHQT010000011.1All displayed genes belong to this local TCS context.
Neighborhood span25 348-27 482 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 348 nt27 482 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SQ297_RS08490GCF_034187895#SQ297_RS08490
RROmpRCurrent focus
25 348-26 046 nt · Forward (+)
SQ297_RS08495GCF_034187895#SQ297_RS08495
HKClassic
26 049-27 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS08945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1133843
Simplified PFAM architecture for RROC_1133843
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1133843
- Positioned domains: Response_reg 5-115 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS08945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_034187895
AssemblyASM3418789v1 · Contighaploid
Genome composition4 140 171 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key