1 Response_reg#1
4-115 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:4:2.22e-34:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS14185
Response regulator OmpR family
Eisenbergiella porci · GCF_034172685
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034172685#SPF95_RS14185Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:3.68e-35:229:75:77- Raw architecture: Response_reg:4:2.22e-34:115:113:111#Trans_reg_C:155:3.68e-35:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034172685::NZ_JAXFEN010000072.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44392-45093Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_14185RefSeq proteinWP_276918991.1
Context group ID
GCF_034172685::NZ_JAXFEN010000072.1::G00019Context members
SPF95_RS14185
Partner locus tags
SPF95_RS14185
Partner old locus tags
SPF95_14185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276918991.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS14185Primary locus identifier stored in the genes table.
Old locus tagSPF95_14185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000072.1Sequence record reported by the local genomic context database.
Genomic interval44 392-45 093 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 392-45 093 ntGCF_034172685::NZ_JAXFEN010000072.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000072.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000072.1All displayed genes belong to this local TCS context.
Neighborhood span44 392-45 093 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 392 nt45 093 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SPF95_RS14185GCF_034172685#SPF95_RS14185
RROmpRCurrent focus
44 392-45 093 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS22635Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1101170
Simplified PFAM architecture for RROC_1101170
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-115] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_1101170
- Positioned domains: Response_reg 4-115 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS22635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key