1 Response_reg#1
4-118 aa · 115 aa · 21.3% of protein
Raw token
Response_reg:4:6.64e-29:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS13165
Response regulator, unclassified
Eisenbergiella porci · GCF_034172685
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS13165Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 540 aa (29.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.00000000221:483:42:42- Raw architecture: Response_reg:4:6.64e-29:118:115:111#HTH_AraC:442:0.00000000221:483:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000067.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70401-73877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_13165RefSeq proteinWP_276917505.1
Context group ID
GCF_034172685::NZ_JAXFEN010000067.1::G00067Context members
SPF95_RS13165SPF95_RS13170
Partner locus tags
SPF95_RS13165SPF95_RS13170
Partner old locus tags
SPF95_13165SPF95_13170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276917505.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS13165Primary locus identifier stored in the genes table.
Old locus tagSPF95_13165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000067.1Sequence record reported by the local genomic context database.
Genomic interval70 401-72 023 nt1 623 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 401-73 877 ntGCF_034172685::NZ_JAXFEN010000067.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000067.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000067.1All displayed genes belong to this local TCS context.
Neighborhood span70 401-73 877 nt3 477 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 401 nt73 877 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS13165GCF_034172685#SPF95_RS13165
RRunclassifiedCurrent focus
70 401-72 023 nt · Reverse (-)
SPF95_RS13170GCF_034172685#SPF95_RS13170
HKClassic
72 075-73 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS18490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0090412
Simplified PFAM architecture for RROC_0090412
PFAM domain coverage: 187 / 540 aa (34.6%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[461-533]
- Domain count: 2
- Matched identifier: RROC_0090412
- Positioned domains: Response_reg 4-117 ; HTH_18 461-533
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS18490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key