1 Response_reg#1
5-115 aa · 111 aa · 47.2% of protein
Raw token
Response_reg:5:7.59e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS13020
Response regulator OmpR family
Eisenbergiella porci · GCF_034172685
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS13020Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 235 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:4.81e-30:232:77:77- Raw architecture: Response_reg:5:7.59e-34:115:111:111#Trans_reg_C:156:4.81e-30:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000067.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41568-43407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_13020RefSeq proteinWP_276919294.1
Context group ID
GCF_034172685::NZ_JAXFEN010000067.1::G00066Context members
SPF95_RS13020SPF95_RS13025
Partner locus tags
SPF95_RS13020SPF95_RS13025
Partner old locus tags
SPF95_13020SPF95_13025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276919294.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS13020Primary locus identifier stored in the genes table.
Old locus tagSPF95_13020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000067.1Sequence record reported by the local genomic context database.
Genomic interval41 568-42 275 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 568-43 407 ntGCF_034172685::NZ_JAXFEN010000067.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000067.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000067.1All displayed genes belong to this local TCS context.
Neighborhood span41 568-43 407 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 568 nt43 407 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS13020GCF_034172685#SPF95_RS13020
RROmpRCurrent focus
41 568-42 275 nt · Forward (+)
SPF95_RS13025GCF_034172685#SPF95_RS13025
HKClassic
42 262-43 407 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS23890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1032823
Simplified PFAM architecture for RROC_1032823
PFAM domain coverage: 187 / 235 aa (79.6%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_1032823
- Positioned domains: Response_reg 5-115 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS23890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key