1 Response_reg#1
3-90 aa · 88 aa · 21.5% of protein
Raw token
Response_reg:3:0.00000000000000424:90:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS12945
Response regulator, unclassified
Eisenbergiella porci · GCF_034172685
ClassRRTypeunclassifiedLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS12945Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage160 / 410 aa (39.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
316-357 aa · 42 aa · 10.2% of protein
Raw token
HTH_AraC:316:0.0000000184:357:42:423 HTH_AraC#3
377-406 aa · 30 aa · 7.3% of protein
Raw token
HTH_AraC:377:0.00000000373:406:30:42- Raw architecture: Response_reg:3:0.00000000000000424:90:114:111#HTH_AraC:316:0.0000000184:357:42:42#HTH_AraC:377:0.00000000373:406:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000067.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24285-27300Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_12945RefSeq proteinWP_276919277.1
Context group ID
GCF_034172685::NZ_JAXFEN010000067.1::G00065Context members
SPF95_RS12940SPF95_RS12945
Partner locus tags
SPF95_RS12940SPF95_RS12945
Partner old locus tags
SPF95_12940SPF95_12945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276919277.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS12945Primary locus identifier stored in the genes table.
Old locus tagSPF95_12945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000067.1Sequence record reported by the local genomic context database.
Genomic interval26 068-27 300 nt1 233 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 285-27 300 ntGCF_034172685::NZ_JAXFEN010000067.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000067.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000067.1All displayed genes belong to this local TCS context.
Neighborhood span24 285-27 300 nt3 016 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 285 nt27 300 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS12940GCF_034172685#SPF95_RS12940
HKClassic
24 285-26 090 nt · Forward (+)
SPF95_RS12945GCF_034172685#SPF95_RS12945
RRunclassifiedCurrent focus
26 068-27 300 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS23815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0370050
Simplified PFAM architecture for RROC_0370050
PFAM domain coverage: 136 / 410 aa (33.2%)
1 aa410 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[34-90] | HTH_18[329-407]
- Domain count: 2
- Matched identifier: RROC_0370050
- Positioned domains: Response_reg 34-90 ; HTH_18 329-407
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS23815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key