1 Response_reg#1
6-121 aa · 116 aa · 63.7% of protein
Raw token
Response_reg:6:0.00000000732:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS12470
Response regulator, unclassified
Eisenbergiella porci · GCF_034172685
ClassRRTypeunclassifiedLength182 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034172685#SPF95_RS12470Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length182 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage116 / 182 aa (63.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa182 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.00000000732:121:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034172685::NZ_JAXFEN010000065.1::G00081
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span13453-14001Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_12470RefSeq proteinWP_154464361.1
Context group ID
GCF_034172685::NZ_JAXFEN010000065.1::G00081Context members
SPF95_RS12470
Partner locus tags
SPF95_RS12470
Partner old locus tags
SPF95_12470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154464361.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WD88Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WD88_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS12470Primary locus identifier stored in the genes table.
Old locus tagSPF95_12470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000065.1Sequence record reported by the local genomic context database.
Genomic interval13 453-14 001 nt549 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 453-14 001 ntGCF_034172685::NZ_JAXFEN010000065.1::G00081
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000065.1::G00081Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000065.1All displayed genes belong to this local TCS context.
Neighborhood span13 453-14 001 nt549 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 453 nt14 001 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SPF95_RS12470GCF_034172685#SPF95_RS12470
RRunclassifiedCurrent focus
13 453-14 001 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS09145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2183658
Simplified PFAM architecture for RROC_2183658
PFAM domain coverage: 116 / 182 aa (63.7%)
1 aa182 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-120]
- Domain count: 1
- Matched identifier: RROC_2183658
- Positioned domains: Response_reg 5-120 ; Response_reg 5-120
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS09145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key