1 Response_reg#1
5-115 aa · 111 aa · 47.6% of protein
Raw token
Response_reg:5:3.17e-33:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS10055
Response regulator OmpR family
Eisenbergiella porci · GCF_034172685
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS10055Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 233 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:5.07e-33:229:77:77- Raw architecture: Response_reg:5:3.17e-33:115:112:111#Trans_reg_C:153:5.07e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000058.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1577-3769Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_10055RefSeq proteinWP_276892593.1
Context group ID
GCF_034172685::NZ_JAXFEN010000058.1::G00001Context members
SPF95_RS10055SPF95_RS10060
Partner locus tags
SPF95_RS10055SPF95_RS10060
Partner old locus tags
SPF95_10055SPF95_10060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276892593.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS10055Primary locus identifier stored in the genes table.
Old locus tagSPF95_10055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000058.1Sequence record reported by the local genomic context database.
Genomic interval1 577-2 278 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 577-3 769 ntGCF_034172685::NZ_JAXFEN010000058.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000058.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000058.1All displayed genes belong to this local TCS context.
Neighborhood span1 577-3 769 nt2 193 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 577 nt3 769 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS10055GCF_034172685#SPF95_RS10055
RROmpRCurrent focus
1 577-2 278 nt · Forward (+)
SPF95_RS10060GCF_034172685#SPF95_RS10060
HKClassic
2 282-3 769 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS15665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1101169
Simplified PFAM architecture for RROC_1101169
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1101169
- Positioned domains: Response_reg 5-114 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS15665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key