1 Response_reg#1
5-115 aa · 111 aa · 27.1% of protein
Raw token
Response_reg:5:3.18e-23:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS08505
Response regulator, unclassified
Eisenbergiella porci · GCF_034172685
ClassRRTypeunclassifiedLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS08505Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 409 aa (37.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
307-348 aa · 42 aa · 10.3% of protein
Raw token
HTH_AraC:307:0.00000000715:348:42:42- Raw architecture: Response_reg:5:3.18e-23:115:111:111#HTH_AraC:307:0.00000000715:348:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000049.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28605-31582Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_08495RefSeq proteinWP_276912789.1
Context group ID
GCF_034172685::NZ_JAXFEN010000049.1::G00006Context members
SPF95_RS08500SPF95_RS08505
Partner locus tags
SPF95_RS08500SPF95_RS08505
Partner old locus tags
SPF95_08490SPF95_08495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276912789.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS08505Primary locus identifier stored in the genes table.
Old locus tagSPF95_08495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000049.1Sequence record reported by the local genomic context database.
Genomic interval30 353-31 582 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span28 605-31 582 ntGCF_034172685::NZ_JAXFEN010000049.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000049.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000049.1All displayed genes belong to this local TCS context.
Neighborhood span28 605-31 582 nt2 978 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 605 nt31 582 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS08500GCF_034172685#SPF95_RS08500
HKClassic
28 605-30 356 nt · Reverse (-)
SPF95_RS08505GCF_034172685#SPF95_RS08505
RRunclassifiedCurrent focus
30 353-31 582 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS00520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0371655
Simplified PFAM architecture for RROC_0371655
PFAM domain coverage: 191 / 409 aa (46.7%)
1 aa409 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[320-399]
- Domain count: 2
- Matched identifier: RROC_0371655
- Positioned domains: Response_reg 5-115 ; HTH_18 320-399
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS00520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key