1 Response_reg#1
15-129 aa · 115 aa · 46.2% of protein
Raw token
Response_reg:15:2.79e-18:129:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS07450
Response regulator LytTR family
Eisenbergiella porci · GCF_034172685
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034172685#SPF95_RS07450Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 249 aa (83.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-241 aa · 92 aa · 36.9% of protein
Raw token
LytTR:150:3.51e-17:241:97:98- Raw architecture: Response_reg:15:2.79e-18:129:117:111#LytTR:150:3.51e-17:241:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034172685::NZ_JAXFEN010000042.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span53097-53846Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_07440RefSeq proteinWP_276913286.1
Context group ID
GCF_034172685::NZ_JAXFEN010000042.1::G00034Context members
SPF95_RS07450
Partner locus tags
SPF95_RS07450
Partner old locus tags
SPF95_07440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276913286.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS07450Primary locus identifier stored in the genes table.
Old locus tagSPF95_07440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000042.1Sequence record reported by the local genomic context database.
Genomic interval53 097-53 846 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 097-53 846 ntGCF_034172685::NZ_JAXFEN010000042.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000042.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000042.1All displayed genes belong to this local TCS context.
Neighborhood span53 097-53 846 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 097 nt53 846 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SPF95_RS07450GCF_034172685#SPF95_RS07450
RRLytTRCurrent focus
53 097-53 846 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS02510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0737560
Simplified PFAM architecture for RROC_0737560
PFAM domain coverage: 205 / 249 aa (82.3%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-128] | LytTR[151-241]
- Domain count: 2
- Matched identifier: RROC_0737560
- Positioned domains: Response_reg 15-128 ; LytTR 151-241
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS02510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key