1 Response_reg#1
5-109 aa · 105 aa · 42.7% of protein
Raw token
Response_reg:5:3.39e-22:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS05975
Response regulator LytTR family
Eisenbergiella porci · GCF_034172685
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034172685#SPF95_RS05975Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 246 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
152-246 aa · 95 aa · 38.6% of protein
Raw token
LytTR:152:2.92e-21:246:95:98- Raw architecture: Response_reg:5:3.39e-22:109:107:111#LytTR:152:2.92e-21:246:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034172685::NZ_JAXFEN010000031.1::G00079
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span17419-18159Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_05965RefSeq proteinWP_154466145.1
Context group ID
GCF_034172685::NZ_JAXFEN010000031.1::G00079Context members
SPF95_RS05975
Partner locus tags
SPF95_RS05975
Partner old locus tags
SPF95_05965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_154466145.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N7WKL1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N7WKL1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS05975Primary locus identifier stored in the genes table.
Old locus tagSPF95_05965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000031.1Sequence record reported by the local genomic context database.
Genomic interval17 419-18 159 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 419-18 159 ntGCF_034172685::NZ_JAXFEN010000031.1::G00079
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000031.1::G00079Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000031.1All displayed genes belong to this local TCS context.
Neighborhood span17 419-18 159 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 419 nt18 159 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
SPF95_RS05975GCF_034172685#SPF95_RS05975
RRLytTRCurrent focus
17 419-18 159 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009696275#FYJ45_RS17415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0776088
Simplified PFAM architecture for RROC_0776088
PFAM domain coverage: 204 / 246 aa (82.9%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-112] | LytTR[150-245]
- Domain count: 2
- Matched identifier: RROC_0776088
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; LytTR 150-245 ; LytTR 150-245
Cluster members and taxonomy
Representative gene: GCF_009696275#FYJ45_RS17415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key