1 Response_reg#1
4-118 aa · 115 aa · 22.8% of protein
Raw token
Response_reg:4:9.2e-28:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SPF95_RS05105
Response regulator, unclassified
Eisenbergiella porci · GCF_034172685
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034172685#SPF95_RS05105Stable P2CS identifier used across views.
GenomeGCF_034172685Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 505 aa (38.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
403-444 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:403:0.000000179:444:42:423 HTH_AraC#3
457-492 aa · 36 aa · 7.1% of protein
Raw token
HTH_AraC:457:0.0000356:492:36:42- Raw architecture: Response_reg:4:9.2e-28:118:115:111#HTH_AraC:403:0.000000179:444:42:42#HTH_AraC:457:0.0000356:492:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034172685::NZ_JAXFEN010000028.1::G00077
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12839-16095Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSPF95_05100RefSeq proteinWP_276918505.1
Context group ID
GCF_034172685::NZ_JAXFEN010000028.1::G00077Context members
SPF95_RS05105SPF95_RS05110
Partner locus tags
SPF95_RS05105SPF95_RS05110
Partner old locus tags
SPF95_05100SPF95_05105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_276918505.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSPF95_RS05105Primary locus identifier stored in the genes table.
Old locus tagSPF95_05100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAXFEN010000028.1Sequence record reported by the local genomic context database.
Genomic interval12 839-14 356 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 839-16 095 ntGCF_034172685::NZ_JAXFEN010000028.1::G00077
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034172685::NZ_JAXFEN010000028.1::G00077Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAXFEN010000028.1All displayed genes belong to this local TCS context.
Neighborhood span12 839-16 095 nt3 257 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 839 nt16 095 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SPF95_RS05105GCF_034172685#SPF95_RS05105
RRunclassifiedCurrent focus
12 839-14 356 nt · Reverse (-)
SPF95_RS05110GCF_034172685#SPF95_RS05110
HKClassic
14 353-16 095 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022781285#MR568_RS21355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0153042
Simplified PFAM architecture for RROC_0153042
PFAM domain coverage: 191 / 505 aa (37.8%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[417-494]
- Domain count: 2
- Matched identifier: RROC_0153042
- Positioned domains: Response_reg 4-116 ; HTH_18 417-494
Cluster members and taxonomy
Representative gene: GCF_022781285#MR568_RS21355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 652 274 · GCF_034172685
AssemblyASM3417268v1 · Contighaploid
Genome composition5 269 973 bp · 48,5% GCEisenbergiella porci
Signal transduction countsGenes 159 · HK 75 · RR 77CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key