1 Response_reg#1
4-116 aa · 113 aa · 36.1% of protein
Raw token
Response_reg:4:6.83e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS18505
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength313 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS18505Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 313 aa (36.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:6.83e-27:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000323.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2775-3714Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000323.1::G00011Context members
U0E46_RS18505
Partner locus tags
U0E46_RS18505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320986646.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS18505Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000323.1Sequence record reported by the local genomic context database.
Genomic interval2 775-3 714 nt940 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 775-3 714 ntGCF_034126625::NZ_JAWYSB010000323.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000323.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000323.1All displayed genes belong to this local TCS context.
Neighborhood span2 775-3 714 nt940 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 775 nt3 714 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS18505GCF_034126625#U0E46_RS18505
RRunclassifiedCurrent focus
2 775-3 714 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS16885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134170
Simplified PFAM architecture for RROC_0134170
PFAM domain coverage: 190 / 516 aa (36.8%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[435-512]
- Domain count: 2
- Matched identifier: RROC_0134170
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 435-512 ; HTH_18 435-512
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS16885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key