1 Response_reg#1
4-118 aa · 115 aa · 21.5% of protein
Raw token
Response_reg:4:1.58e-25:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS18345
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126625#U0E46_RS18345Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 535 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-477 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:436:0.0000000398:477:42:423 HTH_AraC#3
497-525 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:497:0.000000193:525:29:42- Raw architecture: Response_reg:4:1.58e-25:118:115:111#HTH_AraC:436:0.0000000398:477:42:42#HTH_AraC:497:0.000000193:525:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126625::NZ_JAWYSB010000318.1::G00099
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18154-21553Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000318.1::G00099Context members
U0E46_RS18345U0E46_RS18350
Partner locus tags
U0E46_RS18345U0E46_RS18350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320986637.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS18345Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000318.1Sequence record reported by the local genomic context database.
Genomic interval18 154-19 761 nt1 608 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 154-21 553 ntGCF_034126625::NZ_JAWYSB010000318.1::G00099
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000318.1::G00099Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000318.1All displayed genes belong to this local TCS context.
Neighborhood span18 154-21 553 nt3 400 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 154 nt21 553 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E46_RS18345GCF_034126625#U0E46_RS18345
RRunclassifiedCurrent focus
18 154-19 761 nt · Reverse (-)
U0E46_RS18350GCF_034126625#U0E46_RS18350
HKClassic
19 787-21 553 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034126625#U0E46_RS18345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0102170
Simplified PFAM architecture for RROC_0102170
PFAM domain coverage: 191 / 535 aa (35.7%)
1 aa535 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[450-526]
- Domain count: 2
- Matched identifier: RROC_0102170
- Positioned domains: Response_reg 4-117 ; HTH_18 450-526
Cluster members and taxonomy
Representative gene: GCF_034126625#U0E46_RS18345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key