1 Response_reg#1
4-117 aa · 114 aa · 34.1% of protein
Raw token
Response_reg:4:1.25e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS17935
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126625#U0E46_RS17935Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage114 / 334 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.25e-27:117:114:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126625::NZ_JAWYSB010000312.1::G00124
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2801Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000312.1::G00124Context members
U0E46_RS17935U0E46_RS17940
Partner locus tags
U0E46_RS17935U0E46_RS17940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320986625.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS17935Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000312.1Sequence record reported by the local genomic context database.
Genomic interval1-1 003 nt1 003 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-2 801 ntGCF_034126625::NZ_JAWYSB010000312.1::G00124
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000312.1::G00124Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000312.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 801 nt2 801 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 801 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E46_RS17935GCF_034126625#U0E46_RS17935
RRunclassifiedCurrent focus
1-1 003 nt · Reverse (-)
U0E46_RS17940GCF_034126625#U0E46_RS17940
HKClassic
996-2 801 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS14305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116252
Simplified PFAM architecture for RROC_0116252
PFAM domain coverage: 191 / 527 aa (36.2%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[441-518]
- Domain count: 2
- Matched identifier: RROC_0116252
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 441-518 ; HTH_18 441-518
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS14305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key