1 Response_reg#1
4-109 aa · 106 aa · 20.8% of protein
Raw token
Response_reg:4:7.91e-28:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS12395
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength509 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126625#U0E46_RS12395Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length509 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 509 aa (28.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa509 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
469-507 aa · 39 aa · 7.7% of protein
Raw token
HTH_AraC:469:0.0000000015:507:39:42- Raw architecture: Response_reg:4:7.91e-28:109:106:111#HTH_AraC:469:0.0000000015:507:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126625::NZ_JAWYSB010000214.1::G00091
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8127-11408Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000214.1::G00091Context members
U0E46_RS12395U0E46_RS12400
Partner locus tags
U0E46_RS12395U0E46_RS12400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602163.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NVS0Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NVS0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS12395Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000214.1Sequence record reported by the local genomic context database.
Genomic interval8 127-9 656 nt1 530 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 127-11 408 ntGCF_034126625::NZ_JAWYSB010000214.1::G00091
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000214.1::G00091Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000214.1All displayed genes belong to this local TCS context.
Neighborhood span8 127-11 408 nt3 282 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 127 nt11 408 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E46_RS12395GCF_034126625#U0E46_RS12395
RRunclassifiedCurrent focus
8 127-9 656 nt · Reverse (-)
U0E46_RS12400GCF_034126625#U0E46_RS12400
HKClassic
9 669-11 408 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS11835Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0147319
Simplified PFAM architecture for RROC_0147319
PFAM domain coverage: 191 / 509 aa (37.5%)
1 aa509 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[430-507]
- Domain count: 2
- Matched identifier: RROC_0147319
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 430-507 ; HTH_18 430-507
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS11835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key