1 Response_reg#1
5-114 aa · 110 aa · 25.9% of protein
Raw token
Response_reg:5:3.01e-30:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS10660
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength425 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS10660Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 425 aa (44.2%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
328-369 aa · 42 aa · 9.9% of protein
Raw token
HTH_AraC:328:0.0000000895:369:42:423 HTH_AraC#3
384-419 aa · 36 aa · 8.5% of protein
Raw token
HTH_AraC:384:0.000000101:419:36:42- Raw architecture: Response_reg:5:3.01e-30:114:110:111#HTH_AraC:328:0.0000000895:369:42:42#HTH_AraC:384:0.000000101:419:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000191.1::G00057
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3121-4398Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000191.1::G00057Context members
U0E46_RS10660
Partner locus tags
U0E46_RS10660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117632886.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS10660Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000191.1Sequence record reported by the local genomic context database.
Genomic interval3 121-4 398 nt1 278 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 121-4 398 ntGCF_034126625::NZ_JAWYSB010000191.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000191.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000191.1All displayed genes belong to this local TCS context.
Neighborhood span3 121-4 398 nt1 278 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 121 nt4 398 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS10660GCF_034126625#U0E46_RS10660
RRunclassifiedCurrent focus
3 121-4 398 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS23550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0350906
Simplified PFAM architecture for RROC_0350906
PFAM domain coverage: 190 / 425 aa (44.7%)
1 aa425 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[341-419]
- Domain count: 2
- Matched identifier: RROC_0350906
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 341-419 ; HTH_18 341-419
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS23550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key