1 Response_reg#1
10-112 aa · 103 aa · 46.0% of protein
Raw token
Response_reg:10:2.35e-31:112:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS10615
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS10615Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage103 / 224 aa (46.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:10:2.35e-31:112:103:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000190.1::G00154
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11559-12233Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000190.1::G00154Context members
U0E46_RS10615
Partner locus tags
U0E46_RS10615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320986409.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS10615Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000190.1Sequence record reported by the local genomic context database.
Genomic interval11 559-12 233 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 559-12 233 ntGCF_034126625::NZ_JAWYSB010000190.1::G00154
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000190.1::G00154Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000190.1All displayed genes belong to this local TCS context.
Neighborhood span11 559-12 233 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 559 nt12 233 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS10615GCF_034126625#U0E46_RS10615
RRunclassifiedCurrent focus
11 559-12 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034126625#U0E46_RS10615The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1567166
Simplified PFAM architecture for RROC_1567166
PFAM domain coverage: 107 / 224 aa (47.8%)
1 aa224 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[10-116]
- Domain count: 1
- Matched identifier: RROC_1567166
- Positioned domains: Response_reg 10-116
Cluster members and taxonomy
Representative gene: GCF_034126625#U0E46_RS10615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key