1 Response_reg#1
4-113 aa · 110 aa · 36.9% of protein
Raw token
Response_reg:4:5.43e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS10045
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS10045Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 298 aa (62.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
203-244 aa · 42 aa · 14.1% of protein
Raw token
HTH_AraC:203:0.000000636:244:42:423 HTH_AraC#3
261-293 aa · 33 aa · 11.1% of protein
Raw token
HTH_AraC:261:0.00000000501:293:33:42- Raw architecture: Response_reg:4:5.43e-30:113:110:111#HTH_AraC:203:0.000000636:244:42:42#HTH_AraC:261:0.00000000501:293:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000178.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5895-6791Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000178.1::G00036Context members
U0E46_RS10045
Partner locus tags
U0E46_RS10045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632834.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PBH9Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PBH9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS10045Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000178.1Sequence record reported by the local genomic context database.
Genomic interval5 895-6 791 nt897 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 895-6 791 ntGCF_034126625::NZ_JAWYSB010000178.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000178.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000178.1All displayed genes belong to this local TCS context.
Neighborhood span5 895-6 791 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 895 nt6 791 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS10045GCF_034126625#U0E46_RS10045
RRunclassifiedCurrent focus
5 895-6 791 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS23100Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0577292
Simplified PFAM architecture for RROC_0577292
PFAM domain coverage: 188 / 298 aa (63.1%)
1 aa298 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[217-294]
- Domain count: 2
- Matched identifier: RROC_0577292
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 217-294 ; HTH_18 217-294
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS23100
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key