1 Response_reg#1
3-105 aa · 103 aa · 20.7% of protein
Raw token
Response_reg:3:1.26e-21:105:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS04810
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126625#U0E46_RS04810Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 498 aa (29.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
398-439 aa · 42 aa · 8.4% of protein
Raw token
HTH_AraC:398:0.000000712:439:42:42- Raw architecture: Response_reg:3:1.26e-21:105:103:111#HTH_AraC:398:0.000000712:439:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126625::NZ_JAWYSB010000074.1::G00073
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30665-34025Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000074.1::G00073Context members
U0E46_RS04805U0E46_RS04810
Partner locus tags
U0E46_RS04805U0E46_RS04810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117630826.1Primary protein accession used for annex mappings.
UniProt accessionA0A374PBU5Primary UniProt accession resolved in the annex database.
UniProt IDA0A374PBU5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS04810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000074.1Sequence record reported by the local genomic context database.
Genomic interval32 529-34 025 nt1 497 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 665-34 025 ntGCF_034126625::NZ_JAWYSB010000074.1::G00073
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000074.1::G00073Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000074.1All displayed genes belong to this local TCS context.
Neighborhood span30 665-34 025 nt3 361 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 665 nt34 025 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E46_RS04805GCF_034126625#U0E46_RS04805
HKClassic
30 665-32 554 nt · Forward (+)
U0E46_RS04810GCF_034126625#U0E46_RS04810
RRunclassifiedCurrent focus
32 529-34 025 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS06605Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0160229
Simplified PFAM architecture for RROC_0160229
PFAM domain coverage: 182 / 498 aa (36.5%)
1 aa498 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-107] | HTH_18[413-489]
- Domain count: 2
- Matched identifier: RROC_0160229
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; HTH_18 413-489 ; HTH_18 413-489
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS06605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key