1 Response_reg#1
8-112 aa · 105 aa · 8.3% of protein
Raw token
Response_reg:8:1.84e-22:112:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS04330
Response regulator, RpfG family
Hungatella effluvii · GCF_034126625
ClassRRTypeRpfGLength1267 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS04330Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHDPAS_3GGDEF
Protein length1267 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage531 / 1267 aa (41.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,2 PAS_3,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1267 aa
Domain-by-domain annotation5 items
2 HD#2
189-300 aa · 112 aa · 8.8% of protein
Raw token
HD:189:0.0000000000000706:300:112:1103 PAS_3#3
558-624 aa · 67 aa · 5.3% of protein
Raw token
PAS_3:558:0.00000000547:624:67:894 PAS_3#4
672-761 aa · 90 aa · 7.1% of protein
Raw token
PAS_3:672:0.000000000538:761:90:895 GGDEF#5
778-934 aa · 157 aa · 12.4% of protein
Raw token
GGDEF:778:2.58e-49:934:160:160- Raw architecture: Response_reg:8:1.84e-22:112:106:111#HD:189:0.0000000000000706:300:112:110#PAS_3:558:0.00000000547:624:67:89#PAS_3:672:0.000000000538:761:90:89#GGDEF:778:2.58e-49:934:160:160
- Domain description: 1 Response_reg,1 HD,2 PAS_3,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000070.1::G00064
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11189-14992Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000070.1::G00064Context members
U0E46_RS04330
Partner locus tags
U0E46_RS04330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117633540.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P1A5Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P1A5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS04330Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000070.1Sequence record reported by the local genomic context database.
Genomic interval11 189-14 992 nt3 804 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 189-14 992 ntGCF_034126625::NZ_JAWYSB010000070.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000070.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000070.1All displayed genes belong to this local TCS context.
Neighborhood span11 189-14 992 nt3 804 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 189 nt14 992 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS04330GCF_034126625#U0E46_RS04330
RRRpfGCurrent focus
11 189-14 992 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS31415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + PAS_3 + PAS_3 + GGDEF5 domains in the representative PFAM annotation.
PFAM architecture for RROC_0005833
Simplified PFAM architecture for RROC_0005833
PFAM domain coverage: 582 / 1267 aa (45.9%)
1 aa1267 aa
Response_regHD_5PAS_3PAS_3GGDEF
- Simplified architecture: Response_reg + HD_5 + PAS_3 + PAS_3 + GGDEF
- Raw architecture: Response_reg[8-119] | HD_5[164-320] | PAS_3[557-624] | PAS_3[673-761] | GGDEF[779-934]
- Domain count: 5
- Matched identifier: RROC_0005833
- Positioned domains: Response_reg 8-119 ; Response_reg 8-119 ; HD_5 164-320 ; HD_5 164-320 ; PAS_3 557-624 ; PAS_3 557-624 ; PAS_3 673-761 ; PAS_3 673-761 ; GGDEF 779-934 ; GGDEF 779-934
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS31415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key