1 Response_reg#1
6-117 aa · 112 aa · 47.3% of protein
Raw token
Response_reg:6:6.27e-21:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS03360
Response regulator LytTR family
Hungatella effluvii · GCF_034126625
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS03360Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 237 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-224 aa · 84 aa · 35.4% of protein
Raw token
LytTR:141:2.7e-22:224:90:98- Raw architecture: Response_reg:6:6.27e-21:117:118:111#LytTR:141:2.7e-22:224:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000048.1::G00101
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15308-16021Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000048.1::G00101Context members
U0E46_RS03360
Partner locus tags
U0E46_RS03360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117621516.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NWX7Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NWX7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS03360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000048.1Sequence record reported by the local genomic context database.
Genomic interval15 308-16 021 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 308-16 021 ntGCF_034126625::NZ_JAWYSB010000048.1::G00101
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000048.1::G00101Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000048.1All displayed genes belong to this local TCS context.
Neighborhood span15 308-16 021 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 308 nt16 021 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS03360GCF_034126625#U0E46_RS03360
RRLytTRCurrent focus
15 308-16 021 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS32190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0734466
Simplified PFAM architecture for RROC_0734466
PFAM domain coverage: 196 / 249 aa (78.7%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[18-128] | LytTR[153-237]
- Domain count: 2
- Matched identifier: RROC_0734466
- Positioned domains: Response_reg 18-128 ; Response_reg 18-128 ; LytTR 153-237 ; LytTR 153-237
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS32190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key