1 Response_reg#1
4-118 aa · 115 aa · 22.3% of protein
Raw token
Response_reg:4:5.14e-23:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS03220
Response regulator, unclassified
Hungatella effluvii · GCF_034126625
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034126625#U0E46_RS03220Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 516 aa (37.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-452 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:411:0.000000000404:452:42:423 HTH_AraC#3
465-501 aa · 37 aa · 7.2% of protein
Raw token
HTH_AraC:465:0.0000157:501:37:42- Raw architecture: Response_reg:4:5.14e-23:118:115:111#HTH_AraC:411:0.000000000404:452:42:42#HTH_AraC:465:0.0000157:501:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034126625::NZ_JAWYSB010000045.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8535-11868Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000045.1::G00016Context members
U0E46_RS03220U0E46_RS03225
Partner locus tags
U0E46_RS03220U0E46_RS03225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117632575.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P7N3Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P7N3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS03220Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000045.1Sequence record reported by the local genomic context database.
Genomic interval8 535-10 085 nt1 551 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 535-11 868 ntGCF_034126625::NZ_JAWYSB010000045.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000045.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000045.1All displayed genes belong to this local TCS context.
Neighborhood span8 535-11 868 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 535 nt11 868 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E46_RS03220GCF_034126625#U0E46_RS03220
RRunclassifiedCurrent focus
8 535-10 085 nt · Forward (+)
U0E46_RS03225GCF_034126625#U0E46_RS03225
HKClassic
10 066-11 868 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS19915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134581
Simplified PFAM architecture for RROC_0134581
PFAM domain coverage: 193 / 516 aa (37.4%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[425-503]
- Domain count: 2
- Matched identifier: RROC_0134581
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 425-503 ; HTH_18 425-503
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS19915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key