1 Response_reg#1
3-118 aa · 116 aa · 58.0% of protein
Raw token
Response_reg:3:0.000000000000527:118:119:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS02780
Response regulator LytTR family
Hungatella effluvii · GCF_034126625
ClassRRTypeLytTRLength200 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS02780Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 200 aa (89.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-199 aa · 63 aa · 31.5% of protein
Raw token
LytTR:137:0.0000000000000111:199:64:98- Raw architecture: Response_reg:3:0.000000000000527:118:119:111#LytTR:137:0.0000000000000111:199:64:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000038.1::G00118
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28064-28663Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000038.1::G00118Context members
U0E46_RS02780
Partner locus tags
U0E46_RS02780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320986134.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS02780Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000038.1Sequence record reported by the local genomic context database.
Genomic interval28 064-28 663 nt600 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 064-28 663 ntGCF_034126625::NZ_JAWYSB010000038.1::G00118
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000038.1::G00118Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000038.1All displayed genes belong to this local TCS context.
Neighborhood span28 064-28 663 nt600 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 064 nt28 663 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS02780GCF_034126625#U0E46_RS02780
RRLytTRCurrent focus
28 064-28 663 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS13910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888252
Simplified PFAM architecture for RROC_0888252
PFAM domain coverage: 197 / 240 aa (82.1%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[140-224]
- Domain count: 2
- Matched identifier: RROC_0888252
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 140-224 ; LytTR 140-224
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS13910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key