1 Response_reg#1
5-117 aa · 113 aa · 16.6% of protein
Raw token
Response_reg:5:9.49e-27:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E46_RS01755
Response regulator, RpfG family
Hungatella effluvii · GCF_034126625
ClassRRTypeRpfGLength682 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034126625#U0E46_RS01755Stable P2CS identifier used across views.
GenomeGCF_034126625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length682 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage387 / 682 aa (56.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa682 aa
Domain-by-domain annotation3 items
2 HD#2
174-298 aa · 125 aa · 18.3% of protein
Raw token
HD:174:0.000000000000697:298:125:1103 GGDEF#3
514-662 aa · 149 aa · 21.8% of protein
Raw token
GGDEF:514:1.12e-45:662:160:160- Raw architecture: Response_reg:5:9.49e-27:117:114:111#HD:174:0.000000000000697:298:125:110#GGDEF:514:1.12e-45:662:160:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034126625::NZ_JAWYSB010000026.1::G00104
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4212-6260Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034126625::NZ_JAWYSB010000026.1::G00104Context members
U0E46_RS01755
Partner locus tags
U0E46_RS01755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002602070.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NWL1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NWL1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E46_RS01755Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYSB010000026.1Sequence record reported by the local genomic context database.
Genomic interval4 212-6 260 nt2 049 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 212-6 260 ntGCF_034126625::NZ_JAWYSB010000026.1::G00104
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034126625::NZ_JAWYSB010000026.1::G00104Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYSB010000026.1All displayed genes belong to this local TCS context.
Neighborhood span4 212-6 260 nt2 049 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 212 nt6 260 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E46_RS01755GCF_034126625#U0E46_RS01755
RRRpfGCurrent focus
4 212-6 260 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS11355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0033201
Simplified PFAM architecture for RROC_0033201
PFAM domain coverage: 380 / 682 aa (55.7%)
1 aa682 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[5-117] | HD_5[200-317] | GGDEF[514-662]
- Domain count: 3
- Matched identifier: RROC_0033201
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HD_5 200-317 ; HD_5 200-317 ; GGDEF 514-662 ; GGDEF 514-662
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS11355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034126625
AssemblyASM3412662v1 · Scaffoldhaploid
Genome composition6 996 579 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 268 · HK 130 · RR 131CheA 1 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key