1 Response_reg#1
5-116 aa · 112 aa · 22.3% of protein
Raw token
Response_reg:5:1.94e-25:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS28920
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS28920Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 502 aa (29.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa502 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
460-496 aa · 37 aa · 7.4% of protein
Raw token
HTH_AraC:460:0.000000191:496:37:42- Raw architecture: Response_reg:5:1.94e-25:116:112:111#HTH_AraC:460:0.000000191:496:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000114.1::G00135
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span64998-68268Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000114.1::G00135Context members
U0E26_RS28915U0E26_RS28920
Partner locus tags
U0E26_RS28915U0E26_RS28920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320998737.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS28920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000114.1Sequence record reported by the local genomic context database.
Genomic interval66 760-68 268 nt1 509 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span64 998-68 268 ntGCF_034124705::NZ_JAWYAM010000114.1::G00135
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000114.1::G00135Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000114.1All displayed genes belong to this local TCS context.
Neighborhood span64 998-68 268 nt3 271 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 998 nt68 268 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS28915GCF_034124705#U0E26_RS28915
HKClassic
64 998-66 767 nt · Forward (+)
U0E26_RS28920GCF_034124705#U0E26_RS28920
RRunclassifiedCurrent focus
66 760-68 268 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_034124705#U0E26_RS28920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0156658
Simplified PFAM architecture for RROC_0156658
PFAM domain coverage: 189 / 502 aa (37.6%)
1 aa502 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[420-497]
- Domain count: 2
- Matched identifier: RROC_0156658
- Positioned domains: Response_reg 5-115 ; HTH_18 420-497
Cluster members and taxonomy
Representative gene: GCF_034124705#U0E26_RS28920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key