1 HAMP#1
271-340 aa · 70 aa · 12.5% of protein
Raw token
HAMP:271:0.0000000123:340:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS27585
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength561 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS27585Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length561 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 561 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa561 aa
Domain-by-domain annotation3 items
2 His_kinase#2
358-436 aa · 79 aa · 14.1% of protein
Raw token
His_kinase:358:1.63e-30:436:79:803 HATPase_c#3
456-553 aa · 98 aa · 17.5% of protein
Raw token
HATPase_c:456:0.00000000000000119:553:104:109- Raw architecture: HAMP:271:0.0000000123:340:70:69#His_kinase:358:1.63e-30:436:79:80#HATPase_c:456:0.00000000000000119:553:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000105.1::G00131
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span139542-142753Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000105.1::G00131Context members
U0E26_RS27580U0E26_RS27585
Partner locus tags
U0E26_RS27580U0E26_RS27585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467562.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DU49Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DU49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS27585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000105.1Sequence record reported by the local genomic context database.
Genomic interval141 068-142 753 nt1 686 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span139 542-142 753 ntGCF_034124705::NZ_JAWYAM010000105.1::G00131
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000105.1::G00131Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000105.1All displayed genes belong to this local TCS context.
Neighborhood span139 542-142 753 nt3 212 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 542 nt142 753 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS27580GCF_034124705#U0E26_RS27580
RRunclassified
139 542-141 071 nt · Reverse (-)
U0E26_RS27585GCF_034124705#U0E26_RS27585
HKClassicCurrent focus
141 068-142 753 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS00155Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1255008
Simplified PFAM architecture for HKOC_1255008
PFAM domain coverage: 177 / 561 aa (31.6%)
1 aa561 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[358-436] | HATPase_c[456-553]
- Domain count: 2
- Matched identifier: HKOC_1255008
- Positioned domains: His_kinase 358-436 ; HATPase_c 456-553
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS00155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key