1 Response_reg#1
4-113 aa · 110 aa · 43.5% of protein
Raw token
Response_reg:4:3.35e-29:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS24365
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength253 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS24365Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length253 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage141 / 253 aa (55.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa253 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
211-241 aa · 31 aa · 12.3% of protein
Raw token
HTH_AraC:211:0.0000000409:241:31:42- Raw architecture: Response_reg:4:3.35e-29:113:111:111#HTH_AraC:211:0.0000000409:241:31:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000097.1::G00118
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span250404-252910Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000097.1::G00118Context members
U0E26_RS24360U0E26_RS24365
Partner locus tags
U0E26_RS24360U0E26_RS24365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531229.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DJX2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DJX2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS24365Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000097.1Sequence record reported by the local genomic context database.
Genomic interval252 149-252 910 nt762 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span250 404-252 910 ntGCF_034124705::NZ_JAWYAM010000097.1::G00118
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000097.1::G00118Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000097.1All displayed genes belong to this local TCS context.
Neighborhood span250 404-252 910 nt2 507 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
250 404 nt252 910 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS24360GCF_034124705#U0E26_RS24360
HKClassic
250 404-252 152 nt · Reverse (-)
U0E26_RS24365GCF_034124705#U0E26_RS24365
RRunclassifiedCurrent focus
252 149-252 910 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0697240
Simplified PFAM architecture for RROC_0697240
PFAM domain coverage: 189 / 253 aa (74.7%)
1 aa253 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[164-241]
- Domain count: 2
- Matched identifier: RROC_0697240
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 164-241 ; HTH_18 164-241
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key