1 HAMP#1
297-364 aa · 68 aa · 11.2% of protein
Raw token
HAMP:297:0.0000000000000578:364:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS23985
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS23985Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 606 aa (42.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
380-459 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:380:1.68e-35:459:80:803 HATPase_c#3
476-585 aa · 110 aa · 18.2% of protein
Raw token
HATPase_c:476:0.0000000000129:585:111:109- Raw architecture: HAMP:297:0.0000000000000578:364:68:69#His_kinase:380:1.68e-35:459:80:80#HATPase_c:476:0.0000000000129:585:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000097.1::G00117
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154319-156937Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000097.1::G00117Context members
U0E26_RS23985U0E26_RS23990
Partner locus tags
U0E26_RS23985U0E26_RS23990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_320968966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS23985Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000097.1Sequence record reported by the local genomic context database.
Genomic interval154 319-156 139 nt1 821 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 319-156 937 ntGCF_034124705::NZ_JAWYAM010000097.1::G00117
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000097.1::G00117Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000097.1All displayed genes belong to this local TCS context.
Neighborhood span154 319-156 937 nt2 619 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 319 nt156 937 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS23985GCF_034124705#U0E26_RS23985
HKClassicCurrent focus
154 319-156 139 nt · Forward (+)
U0E26_RS23990GCF_034124705#U0E26_RS23990
RRunclassified
156 203-156 937 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405675#ARA98_RS27450Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0972818
Simplified PFAM architecture for HKOC_0972818
PFAM domain coverage: 237 / 620 aa (38.2%)
1 aa620 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[328-377] | His_kinase[395-473] | HATPase_c[491-598]
- Domain count: 3
- Matched identifier: HKOC_0972818
- Positioned domains: HAMP 328-377 ; His_kinase 395-473 ; HATPase_c 491-598
Cluster members and taxonomy
Representative gene: GCF_001405675#ARA98_RS27450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key