1 HisKA#1
123-190 aa · 68 aa · 19.4% of protein
Raw token
HisKA:123:0.00000000000167:190:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS23625
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS23625Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 350 aa (51.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-346 aa · 112 aa · 32.0% of protein
Raw token
HATPase_c:235:7.1e-28:346:113:109- Raw architecture: HisKA:123:0.00000000000167:190:68:64#HATPase_c:235:7.1e-28:346:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000097.1::G00113
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71921-73676Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000097.1::G00113Context members
U0E26_RS23620U0E26_RS23625
Partner locus tags
U0E26_RS23620U0E26_RS23625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243006268.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS23625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000097.1Sequence record reported by the local genomic context database.
Genomic interval72 624-73 676 nt1 053 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 921-73 676 ntGCF_034124705::NZ_JAWYAM010000097.1::G00113
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000097.1::G00113Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000097.1All displayed genes belong to this local TCS context.
Neighborhood span71 921-73 676 nt1 756 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 921 nt73 676 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS23620GCF_034124705#U0E26_RS23620
RROmpR
71 921-72 631 nt · Reverse (-)
U0E26_RS23625GCF_034124705#U0E26_RS23625
HKClassicCurrent focus
72 624-73 676 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS17740Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2797881
Simplified PFAM architecture for HKOC_2797881
PFAM domain coverage: 279 / 350 aa (79.7%)
1 aa350 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[12-114] | HisKA[124-189] | HATPase_c[236-345]
- Domain count: 3
- Matched identifier: HKOC_2797881
- Positioned domains: DUF4118 12-114 ; HisKA 124-189 ; HATPase_c 236-345
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS17740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key