1 Response_reg#1
4-118 aa · 115 aa · 21.5% of protein
Raw token
Response_reg:4:2.37e-31:118:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS22925
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength536 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034124705#U0E26_RS22925Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 536 aa (29.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
435-476 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:435:0.00000143:476:42:42- Raw architecture: Response_reg:4:2.37e-31:118:115:111#HTH_AraC:435:0.00000143:476:42:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034124705::NZ_JAWYAM010000094.1::G00110
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span34811-40623Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000094.1::G00110Context members
U0E26_RS22910U0E26_RS22915U0E26_RS22920U0E26_RS22925
Partner locus tags
U0E26_RS22910U0E26_RS22915U0E26_RS22920U0E26_RS22925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029465391.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DGH7Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DGH7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS22925Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000094.1Sequence record reported by the local genomic context database.
Genomic interval39 013-40 623 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 811-40 623 ntGCF_034124705::NZ_JAWYAM010000094.1::G00110
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000094.1::G00110Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000094.1All displayed genes belong to this local TCS context.
Neighborhood span34 811-40 623 nt5 813 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 811 nt40 623 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E26_RS22910GCF_034124705#U0E26_RS22910
HKClassic
34 811-35 560 nt · Forward (+)
U0E26_RS22915GCF_034124705#U0E26_RS22915
RRunclassified
35 538-37 022 nt · Forward (+)
U0E26_RS22920GCF_034124705#U0E26_RS22920
HKClassic
37 179-39 011 nt · Forward (+)
U0E26_RS22925GCF_034124705#U0E26_RS22925
RRunclassifiedCurrent focus
39 013-40 623 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS22875Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0098848
Simplified PFAM architecture for RROC_0098848
PFAM domain coverage: 193 / 536 aa (36.0%)
1 aa536 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-117] | HTH_18[449-527]
- Domain count: 2
- Matched identifier: RROC_0098848
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_18 449-527 ; HTH_18 449-527
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS22875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key