1 HAMP#1
304-373 aa · 70 aa · 11.5% of protein
Raw token
HAMP:304:0.0000000618:373:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS22920
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength610 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_034124705#U0E26_RS22920Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length610 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 610 aa (41.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa610 aa
Domain-by-domain annotation3 items
2 His_kinase#2
395-474 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:395:5.48e-32:474:80:803 HATPase_c#3
500-600 aa · 101 aa · 16.6% of protein
Raw token
HATPase_c:500:0.000000000128:600:101:109- Raw architecture: HAMP:304:0.0000000618:373:70:69#His_kinase:395:5.48e-32:474:80:80#HATPase_c:500:0.000000000128:600:101:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_034124705::NZ_JAWYAM010000094.1::G00110
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span34811-40623Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000094.1::G00110Context members
U0E26_RS22910U0E26_RS22915U0E26_RS22920U0E26_RS22925
Partner locus tags
U0E26_RS22910U0E26_RS22915U0E26_RS22920U0E26_RS22925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051364645.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DGI2Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DGI2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS22920Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000094.1Sequence record reported by the local genomic context database.
Genomic interval37 179-39 011 nt1 833 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 811-40 623 ntGCF_034124705::NZ_JAWYAM010000094.1::G00110
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000094.1::G00110Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000094.1All displayed genes belong to this local TCS context.
Neighborhood span34 811-40 623 nt5 813 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 811 nt40 623 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
U0E26_RS22910GCF_034124705#U0E26_RS22910
HKClassic
34 811-35 560 nt · Forward (+)
U0E26_RS22915GCF_034124705#U0E26_RS22915
RRunclassified
35 538-37 022 nt · Forward (+)
U0E26_RS22920GCF_034124705#U0E26_RS22920
HKClassicCurrent focus
37 179-39 011 nt · Forward (+)
U0E26_RS22925GCF_034124705#U0E26_RS22925
RRunclassified
39 013-40 623 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS22870Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1005565
Simplified PFAM architecture for HKOC_1005565
PFAM domain coverage: 183 / 610 aa (30.0%)
1 aa610 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[395-474] | HATPase_c[498-600]
- Domain count: 2
- Matched identifier: HKOC_1005565
- Positioned domains: His_kinase 395-474 ; HATPase_c 498-600
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS22870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key