1 PAS_9#1
178-285 aa · 108 aa · 11.2% of protein
Raw token
PAS_9:178:0.000000000647:285:111:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS20795
Histidine kinase, Hybrid
Hungatella effluvii · GCF_034124705
ClassHKTypeHybridLength966 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS20795Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length966 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage518 / 966 aa (53.6%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa966 aa
Domain-by-domain annotation5 items
2 HisKA#2
449-514 aa · 66 aa · 6.8% of protein
Raw token
HisKA:449:0.0000000000000626:514:66:643 HATPase_c#3
562-678 aa · 117 aa · 12.1% of protein
Raw token
HATPase_c:562:7.21e-31:678:117:1094 Response_reg#4
701-806 aa · 106 aa · 11.0% of protein
Raw token
Response_reg:701:3.62e-21:806:106:1115 Response_reg#5
844-964 aa · 121 aa · 12.5% of protein
Raw token
Response_reg:844:5.76e-28:964:121:111- Raw architecture: PAS_9:178:0.000000000647:285:111:102#HisKA:449:0.0000000000000626:514:66:64#HATPase_c:562:7.21e-31:678:117:109#Response_reg:701:3.62e-21:806:106:111#Response_reg:844:5.76e-28:964:121:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000092.1::G00102
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span47966-50866Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000092.1::G00102Context members
U0E26_RS20795
Partner locus tags
U0E26_RS20795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467160.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DEW1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DEW1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS20795Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000092.1Sequence record reported by the local genomic context database.
Genomic interval47 966-50 866 nt2 901 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 966-50 866 ntGCF_034124705::NZ_JAWYAM010000092.1::G00102
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000092.1::G00102Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000092.1All displayed genes belong to this local TCS context.
Neighborhood span47 966-50 866 nt2 901 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 966 nt50 866 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS20795GCF_034124705#U0E26_RS20795
HKHybridCurrent focus
47 966-50 866 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS25135Use this link to inspect the representative gene detail.
PFAM architectureSnoaL_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0314243
Simplified PFAM architecture for HKOC_0314243
PFAM domain coverage: 630 / 966 aa (65.2%)
1 aa966 aa
SnoaL_3PAS_9HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: SnoaL_3 + PAS_9 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: SnoaL_3[21-131] | PAS_9[178-285] | HisKA[449-514] | HATPase_c[562-678] | Response_reg[701-811] | Response_reg[844-960]
- Domain count: 6
- Matched identifier: HKOC_0314243
- Positioned domains: SnoaL_3 21-131 ; PAS_9 178-285 ; HisKA 449-514 ; HATPase_c 562-678 ; Response_reg 701-811 ; Response_reg 844-960
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS25135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key