1 H_kinase_N#1
19-137 aa · 119 aa · 25.2% of protein
Raw token
H_kinase_N:19:3.56e-16:137:122:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS19975
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength473 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS19975Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length473 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage377 / 473 aa (79.7%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa473 aa
Domain-by-domain annotation4 items
2 PAS_4#2
169-264 aa · 96 aa · 20.3% of protein
Raw token
PAS_4:169:0.000000904:264:107:1103 HisKA_2#3
282-356 aa · 75 aa · 15.9% of protein
Raw token
HisKA_2:282:0.00000000000000655:356:76:764 HATPase_c#4
385-471 aa · 87 aa · 18.4% of protein
Raw token
HATPase_c:385:0.0000000000000084:471:102:109- Raw architecture: H_kinase_N:19:3.56e-16:137:122:139#PAS_4:169:0.000000904:264:107:110#HisKA_2:282:0.00000000000000655:356:76:76#HATPase_c:385:0.0000000000000084:471:102:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000087.1::G00099
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span277247-279315Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000087.1::G00099Context members
U0E26_RS19970U0E26_RS19975
Partner locus tags
U0E26_RS19970U0E26_RS19975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467469.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DU78Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DU78_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS19975Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000087.1Sequence record reported by the local genomic context database.
Genomic interval277 894-279 315 nt1 422 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span277 247-279 315 ntGCF_034124705::NZ_JAWYAM010000087.1::G00099
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000087.1::G00099Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000087.1All displayed genes belong to this local TCS context.
Neighborhood span277 247-279 315 nt2 069 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
277 247 nt279 315 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS19970GCF_034124705#U0E26_RS19970
RRAmiR_NasR
277 247-277 822 nt · Forward (+)
U0E26_RS19975GCF_034124705#U0E26_RS19975
HKClassicCurrent focus
277 894-279 315 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS01980Use this link to inspect the representative gene detail.
PFAM architectureGAF_PdtaS + PAS_8 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1689214
Simplified PFAM architecture for HKOC_1689214
PFAM domain coverage: 340 / 473 aa (71.9%)
1 aa473 aa
GAF_PdtaSPAS_8HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_8 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[15-138] | PAS_8[163-215] | HisKA_2[282-354] | HATPase_c[381-470]
- Domain count: 4
- Matched identifier: HKOC_1689214
- Positioned domains: GAF_PdtaS 15-138 ; PAS_8 163-215 ; HisKA_2 282-354 ; HATPase_c 381-470
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS01980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key