1 HisKA#1
564-630 aa · 67 aa · 8.4% of protein
Raw token
HisKA:564:1.33e-16:630:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS18865
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength796 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS18865Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length796 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 796 aa (21.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa796 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
682-785 aa · 104 aa · 13.1% of protein
Raw token
HATPase_c:682:0.000000000000121:785:109:109- Raw architecture: HisKA:564:1.33e-16:630:67:64#HATPase_c:682:0.000000000000121:785:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000087.1::G00094
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14032-17107Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000087.1::G00094Context members
U0E26_RS18860U0E26_RS18865
Partner locus tags
U0E26_RS18860U0E26_RS18865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029467533.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DT97Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DT97_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS18865Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000087.1Sequence record reported by the local genomic context database.
Genomic interval14 717-17 107 nt2 391 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 032-17 107 ntGCF_034124705::NZ_JAWYAM010000087.1::G00094
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000087.1::G00094Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000087.1All displayed genes belong to this local TCS context.
Neighborhood span14 032-17 107 nt3 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 032 nt17 107 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS18860GCF_034124705#U0E26_RS18860
RROmpR
14 032-14 745 nt · Forward (+)
U0E26_RS18865GCF_034124705#U0E26_RS18865
HKClassicCurrent focus
14 717-17 107 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS00840Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0563734
Simplified PFAM architecture for HKOC_0563734
PFAM domain coverage: 172 / 796 aa (21.6%)
1 aa796 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[564-629] | HATPase_c[677-782]
- Domain count: 2
- Matched identifier: HKOC_0563734
- Positioned domains: HisKA 564-629 ; HATPase_c 677-782
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS00840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key