1 HAMP#1
280-349 aa · 70 aa · 12.3% of protein
Raw token
HAMP:280:0.000000000167:349:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS18625
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_034124705#U0E26_RS18625Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 570 aa (45.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-445 aa · 81 aa · 14.2% of protein
Raw token
His_kinase:365:3.33e-26:445:81:803 HATPase_c#3
462-567 aa · 106 aa · 18.6% of protein
Raw token
HATPase_c:462:0.00000485:567:107:109- Raw architecture: HAMP:280:0.000000000167:349:70:69#His_kinase:365:3.33e-26:445:81:80#HATPase_c:462:0.00000485:567:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_034124705::NZ_JAWYAM010000084.1::G00092
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72354-74066Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000084.1::G00092Context members
U0E26_RS18625
Partner locus tags
U0E26_RS18625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_279019342.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS18625Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000084.1Sequence record reported by the local genomic context database.
Genomic interval72 354-74 066 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 354-74 066 ntGCF_034124705::NZ_JAWYAM010000084.1::G00092
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000084.1::G00092Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000084.1All displayed genes belong to this local TCS context.
Neighborhood span72 354-74 066 nt1 713 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 354 nt74 066 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
U0E26_RS18625GCF_034124705#U0E26_RS18625
HKClassicCurrent focus
72 354-74 066 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS19760Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1161931
Simplified PFAM architecture for HKOC_1161931
PFAM domain coverage: 133 / 580 aa (22.9%)
1 aa580 aa
HAMPHis_kinase
- Simplified architecture: HAMP + His_kinase
- Raw architecture: HAMP[308-359] | His_kinase[375-455]
- Domain count: 2
- Matched identifier: HKOC_1161931
- Positioned domains: HAMP 308-359 ; His_kinase 375-455
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS19760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key