1 Response_reg#1
5-106 aa · 102 aa · 18.8% of protein
Raw token
Response_reg:5:5.05e-25:106:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS18125
Response regulator, unclassified
Hungatella effluvii · GCF_034124705
ClassRRTypeunclassifiedLength542 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS18125Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length542 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 542 aa (32.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa542 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
439-477 aa · 39 aa · 7.2% of protein
Raw token
HTH_AraC:439:0.000000699:477:39:423 HTH_AraC#3
492-528 aa · 37 aa · 6.8% of protein
Raw token
HTH_AraC:492:0.00000000145:528:37:42- Raw architecture: Response_reg:5:5.05e-25:106:102:111#HTH_AraC:439:0.000000699:477:39:42#HTH_AraC:492:0.00000000145:528:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000082.1::G00090
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31419-34945Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000082.1::G00090Context members
U0E26_RS18120U0E26_RS18125
Partner locus tags
U0E26_RS18120U0E26_RS18125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025531022.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3DCN0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3DCN0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS18125Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000082.1Sequence record reported by the local genomic context database.
Genomic interval33 317-34 945 nt1 629 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 419-34 945 ntGCF_034124705::NZ_JAWYAM010000082.1::G00090
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000082.1::G00090Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000082.1All displayed genes belong to this local TCS context.
Neighborhood span31 419-34 945 nt3 527 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 419 nt34 945 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS18120GCF_034124705#U0E26_RS18120
HKClassic
31 419-33 320 nt · Forward (+)
U0E26_RS18125GCF_034124705#U0E26_RS18125
RRunclassifiedCurrent focus
33 317-34 945 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS29475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0086011
Simplified PFAM architecture for RROC_0086011
PFAM domain coverage: 321 / 542 aa (59.2%)
1 aa542 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-117] | GGDEF_2[162-291] | HTH_18[451-528]
- Domain count: 3
- Matched identifier: RROC_0086011
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; GGDEF_2 162-291 ; GGDEF_2 162-291 ; HTH_18 451-528 ; HTH_18 451-528
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS29475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key