1 HAMP#1
291-360 aa · 70 aa · 11.8% of protein
Raw token
HAMP:291:0.0000000000493:360:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
U0E26_RS15600
Histidine kinase, Classic
Hungatella effluvii · GCF_034124705
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_034124705#U0E26_RS15600Stable P2CS identifier used across views.
GenomeGCF_034124705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage266 / 595 aa (44.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-457 aa · 81 aa · 13.6% of protein
Raw token
His_kinase:377:1.25e-32:457:81:803 HATPase_c#3
477-591 aa · 115 aa · 19.3% of protein
Raw token
HATPase_c:477:0.0000000624:591:115:109- Raw architecture: HAMP:291:0.0000000000493:360:70:69#His_kinase:377:1.25e-32:457:81:80#HATPase_c:477:0.0000000624:591:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_034124705::NZ_JAWYAM010000075.1::G00081
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span112780-116105Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_034124705::NZ_JAWYAM010000075.1::G00081Context members
U0E26_RS15600U0E26_RS15605
Partner locus tags
U0E26_RS15600U0E26_RS15605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002604105.1Primary protein accession used for annex mappings.
UniProt accessionA0A173X9R7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173X9R7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagU0E26_RS15600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAWYAM010000075.1Sequence record reported by the local genomic context database.
Genomic interval112 780-114 567 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span112 780-116 105 ntGCF_034124705::NZ_JAWYAM010000075.1::G00081
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_034124705::NZ_JAWYAM010000075.1::G00081Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAWYAM010000075.1All displayed genes belong to this local TCS context.
Neighborhood span112 780-116 105 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
112 780 nt116 105 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
U0E26_RS15600GCF_034124705#U0E26_RS15600
HKClassicCurrent focus
112 780-114 567 nt · Forward (+)
U0E26_RS15605GCF_034124705#U0E26_RS15605
RRunclassified
114 579-116 105 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS21620Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1079876
Simplified PFAM architecture for HKOC_1079876
PFAM domain coverage: 195 / 595 aa (32.8%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[378-457] | HATPase_c[476-590]
- Domain count: 2
- Matched identifier: HKOC_1079876
- Positioned domains: His_kinase 378-457 ; HATPase_c 476-590
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS21620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_034124705
AssemblyASM3412470v1 · Scaffoldhaploid
Genome composition7 079 489 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 270 · HK 132 · RR 134CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key